PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00380.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 191aa    MW: 20644.9 Da    PI: 6.2778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00380.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19553153
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                             ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  Rsa1.0_00380.1_g00025.1  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53
                             59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.78E-33563No hitNo description
PROSITE profilePS5103222.155663IPR001471AP2/ERF domain
SMARTSM003801.4E-40669IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-21665IPR016177DNA-binding domain
PfamPF008471.5E-12650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-33664IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPLNNNNNT GDTSEGKTDI SSSSSSLSSI LSAKLRKCCK SPSPSLTCLR LDTASSHIGV  120
WQKRAGSKSD SSWVMTVELG PAGSSQEPTK NASEDDVGPT TEVGGGGGEE GAMDEEEKAA  180
LQMIEELLNT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-18568468ATERF1
2gcc_A9e-18568468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1666231e-104DQ166623.1 Brassica juncea AP2 transcription factor (SHN1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416915.11e-113hypothetical protein EUTSA_v10008845mg
SwissprotQ9XI331e-110WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLV4L6851e-113V4L685_EUTSA; Uncharacterized protein
STRINGAT1G15360.11e-107(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-84ERF family protein